☰ Navigation Tabs
Trans-3/4-proline-hydroxylase H11 with AKG and L-proline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LNS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289.15 0.7M Sodium citrate tribasic dihydrate, 0.1M Bis-Tris propane (pH 7.0)
Crystal Properties Matthews coefficient Solvent content 3.42 64.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.437 α = 90 b = 106.437 β = 90 c = 145.016 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 85.81 94.46 0.132 0.135 0.025 8.3 28.6 44086
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.18 99 0.529 0.538 0.1 0.981 1.3 28.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6LNS 2.14 85.81 41919 2167 94.46 0.1907 0.1885 0.2 0.2332 0.2418 RANDOM 39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 1.69 -3.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.033 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 17.001 r_dihedral_angle_1_deg 7.503 r_angle_refined_deg 1.963 r_angle_other_deg 1.096 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.033 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 17.001 r_dihedral_angle_1_deg 7.503 r_angle_refined_deg 1.963 r_angle_other_deg 1.096 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4218 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing