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Influenza H5N1 nucleoprotein in complex with nucleotides
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.1 M MES, pH 6.0, 0.1 M NaCl and 11% PEG2000
Crystal Properties Matthews coefficient Solvent content 1.94 36.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.01 α = 106.7 b = 60.63 β = 109.01 c = 82.71 γ = 96.62
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9789 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 25.52 90.4 0.102 7.1 1.9 37106
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 91.6 0.253 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 2.3 24.501 37086 1866 90.33 0.196 0.193 0.2017 0.2484 0.2526 34.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.848 0.252 -0.659 1.025 -0.067 -0.864
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.146 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 17.897 r_lrange_it 8.392 r_lrange_other 8.392 r_dihedral_angle_1_deg 7.059 r_scangle_it 5.902 r_scangle_other 5.901 r_mcangle_it 5.141 r_mcangle_other 5.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.146 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 17.897 r_lrange_it 8.392 r_lrange_other 8.392 r_dihedral_angle_1_deg 7.059 r_scangle_it 5.902 r_scangle_other 5.901 r_mcangle_it 5.141 r_mcangle_other 5.141 r_scbond_it 3.846 r_scbond_other 3.845 r_mcbond_it 3.406 r_mcbond_other 3.404 r_angle_refined_deg 1.709 r_angle_other_deg 1.327 r_nbd_other 0.273 r_symmetry_nbd_refined 0.242 r_nbd_refined 0.21 r_symmetry_nbd_other 0.187 r_xyhbond_nbd_refined 0.186 r_symmetry_xyhbond_nbd_refined 0.163 r_nbtor_refined 0.162 r_ncsr_local_group_1 0.091 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.078 r_symmetry_xyhbond_nbd_other 0.056 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6461 Nucleic Acid Atoms 66 Solvent Atoms 155 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing