☰ Navigation Tabs
Influenza H5N1 nucleoprotein (truncated) in complex with nucleotides
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other An in-house model not deposited
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.1 M HEPES, pH 7.5 and 5% propan-2-ol
Crystal Properties Matthews coefficient Solvent content 2.02 39.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.81 α = 107.31 b = 60.12 β = 106.68 c = 81.37 γ = 96.11
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97915 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 38.58 86.1 0.168 5.8 1.9 15710
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 88.2 0.171 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT An in-house model not deposited 3 36.61 14906 803 86.12 0.29085 0.28861 0.33167 RANDOM 31.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 1.97 -1.87 0.81 -1.22 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.381 r_dihedral_angle_3_deg 17.473 r_dihedral_angle_4_deg 16.84 r_long_range_B_refined 7.364 r_long_range_B_other 7.363 r_dihedral_angle_1_deg 5.776 r_mcangle_it 3.077 r_mcangle_other 3.076 r_scangle_other 3.041 r_mcbond_other 1.796
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.381 r_dihedral_angle_3_deg 17.473 r_dihedral_angle_4_deg 16.84 r_long_range_B_refined 7.364 r_long_range_B_other 7.363 r_dihedral_angle_1_deg 5.776 r_mcangle_it 3.077 r_mcangle_other 3.076 r_scangle_other 3.041 r_mcbond_other 1.796 r_mcbond_it 1.795 r_scbond_it 1.738 r_scbond_other 1.737 r_angle_other_deg 1.36 r_angle_refined_deg 1.316 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6309 Nucleic Acid Atoms 63 Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing