☰ Navigation Tabs
Left-handed G-quadruplex containing one bulge
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4U5M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 297 0.04 M sodium cacodylate trihydrate pH 6.0, 55% v/v -2-methyl-2,4-pentanediol and 0.012 M spermine tetrahydrochloride
Crystal Properties Matthews coefficient Solvent content 1.87 34.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.215 α = 90 b = 40.037 β = 115.87 c = 30.376 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2017-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9793 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 27.33 99.7 0.125 0.135 0.052 0.996 9 6.7 20747 8.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.182 1.224 0.938 1.028 0.415 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4U5M 1.18 27.33 19779 921 99.77 0.1212 0.1191 0.1679 0.1708 RANDOM 14.786
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.3 -0.58 0.38
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 34.543 r_sphericity_bonded 12.325 r_rigid_bond_restr 5.181 r_angle_other_deg 2.081 r_angle_refined_deg 1.979 r_chiral_restr 0.108 r_gen_planes_refined 0.041 r_bond_refined_d 0.015 r_bond_other_d 0.008 r_gen_planes_other 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 569 Solvent Atoms 158 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing