7CUK
Structure of a GG mismatch-containing duplex formed by G4C2 repeats
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride | 90% H2O/10% D2O | 102 mM | 7 | 1 atm | 283 | Bruker AVANCE II 600 |
2 | 2D 1H-1H NOESY | 2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride | 100% D2O | 102 mM | 7 | 1 atm | 283 | Bruker AVANCE II 600 |
3 | 2D 1H-1H ROESY | 2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride | 100% D2O | 102 mM | 7 | 1 atm | 283 | Bruker AVANCE II 600 |
4 | 2D 1H-1H TOCSY | 2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride | 100% D2O | 102 mM | 7 | 1 atm | 283 | Bruker AVANCE II 600 |
5 | 2D 1H-13C HSQC aromatic | 2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride | 100% D2O | 102 mM | 7 | 1 atm | 283 | Bruker AVANCE II 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | peak picking | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL | |
3 | chemical shift assignment | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL | |
4 | data analysis | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL | |
5 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |