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 7CUK | pdb_00007cuk

Structure of a GG mismatch-containing duplex formed by G4C2 repeats


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride90% H2O/10% D2O102 mM71 atm283Bruker AVANCE II 600
22D 1H-1H NOESY2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride100% D2O102 mM71 atm283Bruker AVANCE II 600
32D 1H-1H ROESY2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride100% D2O102 mM71 atm283Bruker AVANCE II 600
42D 1H-1H TOCSY2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride100% D2O102 mM71 atm283Bruker AVANCE II 600
52D 1H-13C HSQC aromatic2 mM G2, 20 mM sodium phosphate, 70 mM sodium chloride100% D2O102 mM71 atm283Bruker AVANCE II 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2peak pickingNMRFAM-SPARKYLee W, Tonelli M, Markley JL
3chemical shift assignmentNMRFAM-SPARKYLee W, Tonelli M, Markley JL
4data analysisNMRFAM-SPARKYLee W, Tonelli M, Markley JL
5structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
6refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore