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CRYSTAL STRUCTURE OF STREPTOMYCES ALBOGRISEOLUS FLAVIN-DEPENDENT TRYPTOPHAN 6-HALOGENASE (THAL) IN COMPLEX WITH FAD and AMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HY5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 293 0.28-0.38M NaF, 23-31% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.14 42.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.553 α = 90 b = 118.151 β = 100.88 c = 82.863 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS BRUKER PHOTON 100 2017-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER D8 QUEST 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 20.64 99 0.075 0.081 0.029 0.998 16.9 7.1 77292
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.95 86.2 0.465 0.533 0.253 0.834 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5HY5 1.91 20.64 73446 3807 99 0.177 0.174 0.1832 0.22 0.2272 RANDOM 17.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 -0.84 -0.35 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.082 r_dihedral_angle_4_deg 17.509 r_dihedral_angle_3_deg 14.112 r_dihedral_angle_1_deg 6.962 r_angle_refined_deg 1.361 r_angle_other_deg 0.941 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.082 r_dihedral_angle_4_deg 17.509 r_dihedral_angle_3_deg 14.112 r_dihedral_angle_1_deg 6.962 r_angle_refined_deg 1.361 r_angle_other_deg 0.941 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8438 Nucleic Acid Atoms Solvent Atoms 731 Heterogen Atoms 76
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PROTEUM PLUS data reduction PHASER phasing