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Potato D-enzyme, native (substrate free)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 273 12% PEG 8000, 100 mM HEPES (pH 7.6), 100 mM CaCl2
Crystal Properties Matthews coefficient Solvent content 2.82 56.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.869 α = 90 b = 120.535 β = 90 c = 174.381 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-11-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35.36 99.2 0.032 1 44.2 7.3 49562
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 0.092 0.996
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2 35.36 49547 2503 98.955 0.152 0.1505 0.1623 0.1878 0.1971 26.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.003 0.005 -0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.442 r_dihedral_angle_4_deg 18.139 r_dihedral_angle_3_deg 13.773 r_lrange_it 8.412 r_lrange_other 8.243 r_dihedral_angle_1_deg 6.544 r_scangle_it 5.758 r_scangle_other 5.757 r_mcangle_other 4.366 r_mcangle_it 4.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.442 r_dihedral_angle_4_deg 18.139 r_dihedral_angle_3_deg 13.773 r_lrange_it 8.412 r_lrange_other 8.243 r_dihedral_angle_1_deg 6.544 r_scangle_it 5.758 r_scangle_other 5.757 r_mcangle_other 4.366 r_mcangle_it 4.365 r_scbond_it 3.76 r_scbond_other 3.759 r_mcbond_it 3.034 r_mcbond_other 3 r_angle_other_deg 2.474 r_angle_refined_deg 1.803 r_symmetry_nbd_other 0.222 r_nbd_other 0.22 r_nbd_refined 0.216 r_symmetry_xyhbond_nbd_refined 0.18 r_xyhbond_nbd_refined 0.175 r_nbtor_refined 0.173 r_symmetry_nbd_refined 0.147 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.079 r_bond_other_d 0.034 r_gen_planes_other 0.017 r_bond_refined_d 0.013 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4183 Nucleic Acid Atoms Solvent Atoms 605 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing