7CMR

The Crystal Structure of human MYST1 from Biortus.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2GIV

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.2M LiCl, 0.1M Hepes pH7, 20% PEG6,000

Crystal Properties
Matthews coefficient	Solvent content
1.5	18.14

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 46.399	α = 90
b = 58.322	β = 90
c = 121.12	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2020-05-31	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U1	0.97918	SSRF	BL17U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	50	96.9	0.076	20.8	7.1		16888

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.2	2.24			0.282

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2giv	2.2	30.476	16839	804	96.865	0.22	0.2178	0.2632	44.592

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.214			3.873		-0.66

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.459
r_dihedral_angle_4_deg	16.651
r_dihedral_angle_3_deg	13.888
r_dihedral_angle_1_deg	6.631
r_lrange_it	3.967
r_lrange_other	3.957
r_scangle_it	2.458
r_scangle_other	2.457
r_mcangle_it	2.379
r_mcangle_other	2.378
r_mcbond_other	1.441
r_mcbond_it	1.44
r_scbond_it	1.438
r_scbond_other	1.438
r_angle_refined_deg	1.16
r_angle_other_deg	1.061
r_symmetry_xyhbond_nbd_refined	0.226
r_nbd_refined	0.178
r_symmetry_nbd_other	0.164
r_nbtor_refined	0.162
r_nbd_other	0.134
r_xyhbond_nbd_other	0.118
r_xyhbond_nbd_refined	0.11
r_symmetry_nbtor_other	0.071
r_symmetry_nbd_refined	0.07
r_chiral_restr	0.044
r_metal_ion_refined	0.022
r_gen_planes_refined	0.003
r_bond_refined_d	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2163
Nucleic Acid Atoms
Solvent Atoms	62
Heterogen Atoms	7

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing