7CMR

The Crystal Structure of human MYST1 from Biortus.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2M LiCl, 0.1M Hepes pH7, 20% PEG6,000
Crystal Properties
Matthews coefficientSolvent content
1.518.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.399α = 90
b = 58.322β = 90
c = 121.12γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-05-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97918SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25096.90.07620.87.116888
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.240.282

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2giv2.230.4761683980496.8650.220.21780.263244.592
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.2143.873-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.459
r_dihedral_angle_4_deg16.651
r_dihedral_angle_3_deg13.888
r_dihedral_angle_1_deg6.631
r_lrange_it3.967
r_lrange_other3.957
r_scangle_it2.458
r_scangle_other2.457
r_mcangle_it2.379
r_mcangle_other2.378
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.459
r_dihedral_angle_4_deg16.651
r_dihedral_angle_3_deg13.888
r_dihedral_angle_1_deg6.631
r_lrange_it3.967
r_lrange_other3.957
r_scangle_it2.458
r_scangle_other2.457
r_mcangle_it2.379
r_mcangle_other2.378
r_mcbond_other1.441
r_mcbond_it1.44
r_scbond_it1.438
r_scbond_other1.438
r_angle_refined_deg1.16
r_angle_other_deg1.061
r_symmetry_xyhbond_nbd_refined0.226
r_nbd_refined0.178
r_symmetry_nbd_other0.164
r_nbtor_refined0.162
r_nbd_other0.134
r_xyhbond_nbd_other0.118
r_xyhbond_nbd_refined0.11
r_symmetry_nbtor_other0.071
r_symmetry_nbd_refined0.07
r_chiral_restr0.044
r_metal_ion_refined0.022
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2163
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing