☰ Navigation Tabs
Structural and functional analysis of small heat shock protein from Synechococcus phage S-ShM2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.2M Lithium sulphate monohydrate, 0.1M Tris, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.42 57.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.146 α = 90 b = 126.146 β = 90 c = 152.9 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9536 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 7 48.7 99.4 0.164 0.994 9.5 6.5 1915
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 7 7.83 100 1.53 0.628
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZJA 7 48.65 1816 99 99.17 0.35063 0.34566 0.3611 0.4335 0.4426 RANDOM 490.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.88 -4.88 9.76
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 68.539 r_long_range_B_other 68.533 r_mcangle_it 42.842 r_mcangle_other 42.836 r_scangle_other 35.856 r_mcbond_it 24.678 r_mcbond_other 24.673 r_dihedral_angle_2_deg 21.311 r_scbond_other 19.221 r_scbond_it 19.22
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 68.539 r_long_range_B_other 68.533 r_mcangle_it 42.842 r_mcangle_other 42.836 r_scangle_other 35.856 r_mcbond_it 24.678 r_mcbond_other 24.673 r_dihedral_angle_2_deg 21.311 r_scbond_other 19.221 r_scbond_it 19.22 r_dihedral_angle_4_deg 14.066 r_dihedral_angle_3_deg 14 r_dihedral_angle_1_deg 7.632 r_angle_refined_deg 1.006 r_angle_other_deg 0.381 r_chiral_restr 0.046 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4678 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing