☰ Navigation Tabs
Crystal Structure Of Human Il-1beta In Complex With Antibody Binding Fragment Of IgG26A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I1B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 17% (w/v) PEG 3350, 10% (v/v) glycerol, and 0.1 M citric acid at pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.6 52.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.694 α = 90 b = 112.699 β = 94.531 c = 38.935 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD RAYONIX MX-225 2016-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 25 98.9 0.88 28.8 3.7 23536
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.57 0.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2I1B 2.5 23.941 22991 1142 98.916 0.196 0.1926 0.1973 0.2595 0.2615 52.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.111 0.384 0.164 -0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.57 r_dihedral_angle_4_deg 19.719 r_dihedral_angle_3_deg 16.187 r_dihedral_angle_1_deg 8.14 r_lrange_it 6.81 r_lrange_other 6.759 r_mcangle_it 3.958 r_mcangle_other 3.957 r_scangle_it 3.006 r_scangle_other 3.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.57 r_dihedral_angle_4_deg 19.719 r_dihedral_angle_3_deg 16.187 r_dihedral_angle_1_deg 8.14 r_lrange_it 6.81 r_lrange_other 6.759 r_mcangle_it 3.958 r_mcangle_other 3.957 r_scangle_it 3.006 r_scangle_other 3.006 r_mcbond_it 2.223 r_mcbond_other 2.221 r_scbond_it 1.643 r_scbond_other 1.641 r_angle_refined_deg 1.58 r_angle_other_deg 1.215 r_symmetry_nbd_refined 0.237 r_nbd_other 0.22 r_symmetry_nbd_other 0.186 r_nbd_refined 0.18 r_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.164 r_symmetry_xyhbond_nbd_refined 0.132 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.066 r_symmetry_xyhbond_nbd_other 0.033 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4465 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing