7CBW

Blasnase-T13A with D-asn

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7C91

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		295	formate

Crystal Properties
Matthews coefficient	Solvent content
2.95	58.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.94	α = 90
b = 91.94	β = 90
c = 231.516	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2018-10-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL18U1	0.9791	SSRF	BL18U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	49.029	98.9	0.021	0.999	20.5	23.6		93591

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	2.02	82.6		0.235	0.826	2.3	9.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7C91	1.978	49.029	69388	3438	98.819	0.168	0.1673	0.1874	32.464

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.281			0.281		-0.563

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.915
r_dihedral_angle_3_deg	15.327
r_dihedral_angle_4_deg	14.72
r_lrange_other	5.842
r_lrange_it	5.841
r_dihedral_angle_1_deg	5.746
r_scangle_other	5.082
r_scangle_it	5.077
r_scbond_it	3.752
r_scbond_other	3.732
r_mcangle_it	3.6
r_mcangle_other	3.6
r_mcbond_it	2.909
r_mcbond_other	2.909
r_angle_other_deg	2.3
r_angle_refined_deg	1.699
r_symmetry_nbd_other	0.218
r_nbd_refined	0.203
r_nbtor_refined	0.183
r_xyhbond_nbd_refined	0.183
r_nbd_other	0.155
r_symmetry_xyhbond_nbd_refined	0.153
r_symmetry_nbd_refined	0.15
r_chiral_restr	0.092
r_symmetry_nbtor_other	0.077
r_symmetry_xyhbond_nbd_other	0.061
r_bond_other_d	0.036
r_bond_refined_d	0.015
r_gen_planes_refined	0.005
r_gen_planes_other	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4920
Nucleic Acid Atoms
Solvent Atoms	459
Heterogen Atoms	25

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing