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Crystal structures of of BlAsnase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7C91
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 formate
Crystal Properties Matthews coefficient Solvent content 2.95 58.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.08 α = 90 b = 92.08 β = 90 c = 230.65 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9791 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.037 85.52 99.9 0.021 0.999 20.6 25.7 64416
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.09 0.188 0.87 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7C91 2.04 85.517 64313 3207 99.91 0.183 0.1822 0.182 0.2036 0.2034 41.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.571 0.571 -1.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.923 r_dihedral_angle_3_deg 17.133 r_dihedral_angle_4_deg 17.133 r_lrange_other 5.995 r_lrange_it 5.994 r_dihedral_angle_1_deg 5.791 r_scangle_it 5.299 r_scangle_other 5.299 r_scbond_it 3.872 r_scbond_other 3.868
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.923 r_dihedral_angle_3_deg 17.133 r_dihedral_angle_4_deg 17.133 r_lrange_other 5.995 r_lrange_it 5.994 r_dihedral_angle_1_deg 5.791 r_scangle_it 5.299 r_scangle_other 5.299 r_scbond_it 3.872 r_scbond_other 3.868 r_mcangle_it 3.649 r_mcangle_other 3.649 r_mcbond_it 2.881 r_mcbond_other 2.881 r_angle_other_deg 2.297 r_angle_refined_deg 1.692 r_symmetry_nbd_other 0.226 r_nbd_refined 0.202 r_nbd_other 0.193 r_nbtor_refined 0.186 r_symmetry_nbd_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.176 r_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_other 0.117 r_chiral_restr 0.092 r_symmetry_nbtor_other 0.08 r_bond_other_d 0.036 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4924 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing