7CA4

The Crystal Structure of human Bcl-2-like protein 1 from Biortus

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3CVA

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	50mM MES, pH6.2, 1.8M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.34	43.07

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.213	α = 90
b = 63.213	β = 90
c = 111.009	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU SATURN 944+		2020-01-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E SUPERBRIGHT	1.54178

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	50	99.7	0.124	16.69	8.7		6656

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.75			0.601

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3cva	2.7	31.954	6625	327	99.759	0.2	0.1984	0.2284	40.404

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.341			0.341		-0.683

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.386
r_dihedral_angle_4_deg	23.327
r_dihedral_angle_3_deg	18.828
r_lrange_it	7.025
r_lrange_other	7.024
r_dihedral_angle_1_deg	6.48
r_scangle_it	3.383
r_scangle_other	3.362
r_mcangle_it	3.111
r_mcangle_other	3.109
r_scbond_it	1.94
r_scbond_other	1.909
r_mcbond_other	1.804
r_mcbond_it	1.803
r_angle_refined_deg	1.236
r_angle_other_deg	1.153
r_nbd_refined	0.192
r_nbd_other	0.189
r_symmetry_nbd_other	0.187
r_symmetry_nbd_refined	0.167
r_nbtor_refined	0.166
r_xyhbond_nbd_refined	0.157
r_symmetry_xyhbond_nbd_refined	0.125
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.05
r_gen_planes_refined	0.004
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1161
Nucleic Acid Atoms
Solvent Atoms	30
Heterogen Atoms	15

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing