7C82

Crystal structure of AlinE4, a SGNH-hydrolase family esterase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291.151M Sodium acetate, 100mM HEPES, pH 7.5, 50mM Cadmium sulfate
Crystal Properties
Matthews coefficientSolvent content
2.3447.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.783α = 90
b = 79.783β = 90
c = 61.01γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80CCDADSC QUANTUM 315r2017-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97931SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1848.4699.050.07320264489
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.181.220.645

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4JGG1.1848.4661212329199.0430.1280.1270.154614.738
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.063-0.0630.126
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.725
r_dihedral_angle_4_deg22.583
r_dihedral_angle_3_deg13.932
r_dihedral_angle_1_deg5.662
r_rigid_bond_restr5.193
r_scangle_it3.983
r_scangle_other3.982
r_scbond_it3.46
r_scbond_other3.458
r_lrange_it3.272
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.725
r_dihedral_angle_4_deg22.583
r_dihedral_angle_3_deg13.932
r_dihedral_angle_1_deg5.662
r_rigid_bond_restr5.193
r_scangle_it3.983
r_scangle_other3.982
r_scbond_it3.46
r_scbond_other3.458
r_lrange_it3.272
r_lrange_other3.15
r_angle_refined_deg2.131
r_mcangle_other1.862
r_mcangle_it1.849
r_angle_other_deg1.662
r_mcbond_it1.54
r_mcbond_other1.454
r_symmetry_nbd_refined0.317
r_nbd_refined0.272
r_xyhbond_nbd_refined0.208
r_symmetry_xyhbond_nbd_refined0.207
r_symmetry_nbd_other0.2
r_nbd_other0.188
r_nbtor_refined0.178
r_chiral_restr0.139
r_symmetry_nbtor_other0.091
r_metal_ion_refined0.073
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1439
Nucleic Acid Atoms
Solvent Atoms221
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
PHENIXphasing