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C-terminal domain of B. cereus TubY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 PEG400
Crystal Properties Matthews coefficient Solvent content 2.24 45.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.053 α = 101.97 b = 40.282 β = 94.22 c = 80.669 γ = 98.52
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2016-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.97911 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 98 0.064 27.2 3.9 9894
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 0.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 26.16 9399 466 97.8 0.22674 0.2243 0.2295 0.2772 0.2457 RANDOM 60.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.02 0.85 -3.65 2.3 -2.84 -5.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.412 r_dihedral_angle_4_deg 19.957 r_dihedral_angle_3_deg 19.629 r_long_range_B_refined 12.678 r_long_range_B_other 12.676 r_scangle_other 11.513 r_scbond_it 7.573 r_scbond_other 7.562 r_mcangle_it 6.901 r_mcangle_other 6.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.412 r_dihedral_angle_4_deg 19.957 r_dihedral_angle_3_deg 19.629 r_long_range_B_refined 12.678 r_long_range_B_other 12.676 r_scangle_other 11.513 r_scbond_it 7.573 r_scbond_other 7.562 r_mcangle_it 6.901 r_mcangle_other 6.899 r_dihedral_angle_1_deg 4.927 r_mcbond_it 4.84 r_mcbond_other 4.839 r_angle_refined_deg 1.519 r_angle_other_deg 1.307 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2165 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AutoSol phasing