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Crystal structure of histidine-containing phosphotransfer protein B (HptB) from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 PEG 6000, bicine/sodium hydroxide
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.172 α = 90 b = 119.172 β = 90 c = 171.95 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RAYONIX MX300HE 2017-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 98.4 0.072 0.075 0.02 36.3 14.5 166104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 99.6 0.761 0.789 0.208 4.2 14.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.58 29.37 157637 8321 98.4 0.19447 0.19284 0.2016 0.22542 0.232 RANDOM 22.963
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.19 r_dihedral_angle_4_deg 23.453 r_dihedral_angle_3_deg 13.363 r_long_range_B_refined 9.976 r_long_range_B_other 9.765 r_scangle_other 7.208 r_dihedral_angle_1_deg 6.086 r_scbond_it 5.203 r_scbond_other 5.203 r_mcangle_other 3.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.19 r_dihedral_angle_4_deg 23.453 r_dihedral_angle_3_deg 13.363 r_long_range_B_refined 9.976 r_long_range_B_other 9.765 r_scangle_other 7.208 r_dihedral_angle_1_deg 6.086 r_scbond_it 5.203 r_scbond_other 5.203 r_mcangle_other 3.763 r_mcangle_it 3.746 r_angle_refined_deg 3.085 r_mcbond_it 2.972 r_mcbond_other 2.939 r_angle_other_deg 1.804 r_chiral_restr 0.129 r_gen_planes_refined 0.018 r_gen_planes_other 0.004 r_bond_refined_d 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5499 Nucleic Acid Atoms Solvent Atoms 1229 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing