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Mevo lectin complex with alpha-mannose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7BSM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6 296 6%(v/v) Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25%(w/v)
polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.82 56.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.849 α = 90 b = 168.849 β = 90 c = 193.639 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.979 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 96.82 98.4 0.22 0.99 6.1 10.7 101188
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.58 0.75 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7BSM 2.45 84.567 100875 5072 98.115 0.244 0.2423 0.2837 0.2839 36.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.301 -4.301 8.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.081 r_dihedral_angle_3_deg 16.34 r_dihedral_angle_4_deg 12.923 r_lrange_other 8.957 r_lrange_it 8.956 r_dihedral_angle_1_deg 8.467 r_scangle_it 5.691 r_scangle_other 5.691 r_mcangle_it 5.286 r_mcangle_other 5.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.081 r_dihedral_angle_3_deg 16.34 r_dihedral_angle_4_deg 12.923 r_lrange_other 8.957 r_lrange_it 8.956 r_dihedral_angle_1_deg 8.467 r_scangle_it 5.691 r_scangle_other 5.691 r_mcangle_it 5.286 r_mcangle_other 5.286 r_scbond_it 3.702 r_scbond_other 3.702 r_mcbond_it 3.413 r_mcbond_other 3.413 r_angle_other_deg 2.477 r_angle_refined_deg 1.891 r_nbd_other 0.279 r_symmetry_nbd_other 0.22 r_symmetry_xyhbond_nbd_refined 0.188 r_nbd_refined 0.183 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.156 r_symmetry_nbd_refined 0.12 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_other 0.058 r_bond_other_d 0.037 r_bond_refined_d 0.012 r_gen_planes_other 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14576 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing