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Mevo lectin complex with 2alpha-mannobiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7BSB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 296 6%(v/v) Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25%(w/v)
polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.85 56.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.359 α = 90 b = 170.359 β = 90 c = 192.499 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9767 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 96.25 100 0.22 0.99 9 13.2 70202
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 0.73 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7BSB 2.8 96.25 70117 3494 99.987 0.229 0.2271 0.2305 0.2604 0.2622 53.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.908 -2.908 5.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.968 r_dihedral_angle_3_deg 15.779 r_dihedral_angle_4_deg 13.514 r_lrange_other 12.872 r_lrange_it 12.869 r_scangle_other 10.959 r_scangle_it 10.958 r_mcangle_it 9.823 r_mcangle_other 9.822 r_scbond_it 7.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.968 r_dihedral_angle_3_deg 15.779 r_dihedral_angle_4_deg 13.514 r_lrange_other 12.872 r_lrange_it 12.869 r_scangle_other 10.959 r_scangle_it 10.958 r_mcangle_it 9.823 r_mcangle_other 9.822 r_scbond_it 7.926 r_scbond_other 7.926 r_dihedral_angle_1_deg 7.685 r_mcbond_other 7.054 r_mcbond_it 7.053 r_angle_other_deg 2.499 r_angle_refined_deg 1.89 r_nbd_other 0.287 r_symmetry_nbd_other 0.227 r_symmetry_xyhbond_nbd_refined 0.213 r_symmetry_nbd_refined 0.211 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.175 r_nbtor_refined 0.172 r_ncsr_local_group_42 0.118 r_ncsr_local_group_41 0.115 r_ncsr_local_group_66 0.11 r_ncsr_local_group_77 0.108 r_ncsr_local_group_78 0.107 r_ncsr_local_group_51 0.106 r_ncsr_local_group_83 0.106 r_ncsr_local_group_82 0.103 r_ncsr_local_group_44 0.101 r_ncsr_local_group_71 0.101 r_ncsr_local_group_58 0.1 r_ncsr_local_group_65 0.1 r_ncsr_local_group_85 0.1 r_ncsr_local_group_3 0.099 r_ncsr_local_group_8 0.098 r_ncsr_local_group_31 0.098 r_ncsr_local_group_59 0.098 r_ncsr_local_group_72 0.098 r_ncsr_local_group_38 0.097 r_ncsr_local_group_39 0.097 r_ncsr_local_group_84 0.097 r_ncsr_local_group_9 0.096 r_ncsr_local_group_21 0.096 r_ncsr_local_group_40 0.096 r_ncsr_local_group_61 0.096 r_ncsr_local_group_46 0.095 r_ncsr_local_group_50 0.094 r_ncsr_local_group_4 0.093 r_ncsr_local_group_5 0.093 r_ncsr_local_group_32 0.093 r_ncsr_local_group_45 0.093 r_ncsr_local_group_86 0.093 r_ncsr_local_group_15 0.092 r_ncsr_local_group_37 0.092 r_ncsr_local_group_52 0.092 r_ncsr_local_group_20 0.091 r_ncsr_local_group_81 0.091 r_ncsr_local_group_10 0.089 r_ncsr_local_group_43 0.089 r_ncsr_local_group_2 0.088 r_ncsr_local_group_6 0.088 r_ncsr_local_group_22 0.087 r_ncsr_local_group_67 0.087 r_ncsr_local_group_68 0.087 r_ncsr_local_group_80 0.087 r_ncsr_local_group_88 0.087 r_ncsr_local_group_11 0.086 r_ncsr_local_group_56 0.086 r_ncsr_local_group_19 0.085 r_ncsr_local_group_29 0.085 r_ncsr_local_group_60 0.085 r_ncsr_local_group_1 0.084 r_ncsr_local_group_74 0.084 r_ncsr_local_group_79 0.084 r_ncsr_local_group_13 0.083 r_ncsr_local_group_23 0.083 r_ncsr_local_group_26 0.083 r_ncsr_local_group_33 0.083 r_ncsr_local_group_63 0.083 r_ncsr_local_group_73 0.083 r_ncsr_local_group_18 0.081 r_ncsr_local_group_57 0.081 r_symmetry_nbtor_other 0.08 r_ncsr_local_group_12 0.08 r_ncsr_local_group_30 0.08 r_ncsr_local_group_34 0.08 r_ncsr_local_group_49 0.08 r_ncsr_local_group_76 0.08 r_ncsr_local_group_70 0.079 r_ncsr_local_group_89 0.079 r_ncsr_local_group_28 0.078 r_ncsr_local_group_47 0.078 r_ncsr_local_group_62 0.078 r_ncsr_local_group_64 0.078 r_ncsr_local_group_75 0.078 r_ncsr_local_group_87 0.078 r_ncsr_local_group_16 0.077 r_ncsr_local_group_69 0.077 r_ncsr_local_group_17 0.076 r_ncsr_local_group_53 0.076 r_chiral_restr 0.075 r_symmetry_xyhbond_nbd_other 0.075 r_ncsr_local_group_90 0.075 r_ncsr_local_group_24 0.074 r_ncsr_local_group_25 0.074 r_ncsr_local_group_27 0.074 r_ncsr_local_group_35 0.074 r_ncsr_local_group_48 0.074 r_ncsr_local_group_54 0.074 r_ncsr_local_group_7 0.072 r_ncsr_local_group_14 0.071 r_ncsr_local_group_55 0.071 r_ncsr_local_group_36 0.07 r_ncsr_local_group_91 0.067 r_bond_other_d 0.037 r_chiral_restr_other 0.022 r_gen_planes_other 0.016 r_bond_refined_d 0.014 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14630 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 224
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing