☰ Navigation Tabs
Mevo lectin- Native form-2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZNO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 296 6%(v/v) Tacsimate pH 6.0,
0.1 M MES monohydrate pH 6.0,
25%(w/v) polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.82 56.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 169.45 α = 90 b = 169.45 β = 90 c = 192.23 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2016-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 96.12 99.9 0.14 0.998 11.8 12.7 102790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.58 99.8 0.828 2.2 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4ZNO 2.45 70.599 102101 5134 99.312 0.233 0.2311 0.2357 0.2704 0.2726 47.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.192 -3.192 6.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.937 r_dihedral_angle_4_deg 14.26 r_dihedral_angle_3_deg 13.398 r_lrange_other 12.029 r_lrange_it 12.027 r_scangle_it 9.612 r_scangle_other 9.611 r_mcangle_it 8.583 r_mcangle_other 8.583 r_dihedral_angle_1_deg 8.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.937 r_dihedral_angle_4_deg 14.26 r_dihedral_angle_3_deg 13.398 r_lrange_other 12.029 r_lrange_it 12.027 r_scangle_it 9.612 r_scangle_other 9.611 r_mcangle_it 8.583 r_mcangle_other 8.583 r_dihedral_angle_1_deg 8.303 r_scbond_it 7.126 r_scbond_other 7.125 r_mcbond_it 6.463 r_mcbond_other 6.462 r_angle_other_deg 2.422 r_angle_refined_deg 1.717 r_nbd_other 0.273 r_symmetry_nbd_other 0.215 r_symmetry_nbd_refined 0.203 r_symmetry_xyhbond_nbd_refined 0.196 r_nbd_refined 0.17 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.153 r_symmetry_xyhbond_nbd_other 0.094 r_ncsr_local_group_42 0.081 r_ncsr_local_group_82 0.08 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.074 r_ncsr_local_group_66 0.074 r_ncsr_local_group_3 0.072 r_ncsr_local_group_10 0.072 r_ncsr_local_group_73 0.071 r_ncsr_local_group_20 0.07 r_ncsr_local_group_33 0.07 r_ncsr_local_group_14 0.069 r_ncsr_local_group_51 0.069 r_ncsr_local_group_12 0.068 r_ncsr_local_group_84 0.068 r_ncsr_local_group_4 0.067 r_ncsr_local_group_19 0.067 r_ncsr_local_group_21 0.067 r_ncsr_local_group_40 0.067 r_ncsr_local_group_65 0.067 r_ncsr_local_group_83 0.067 r_ncsr_local_group_85 0.067 r_ncsr_local_group_24 0.066 r_ncsr_local_group_32 0.066 r_ncsr_local_group_89 0.066 r_ncsr_local_group_16 0.065 r_ncsr_local_group_72 0.065 r_ncsr_local_group_86 0.065 r_ncsr_local_group_6 0.064 r_ncsr_local_group_26 0.064 r_ncsr_local_group_41 0.064 r_ncsr_local_group_49 0.064 r_ncsr_local_group_68 0.064 r_ncsr_local_group_77 0.064 r_ncsr_local_group_78 0.064 r_ncsr_local_group_18 0.063 r_ncsr_local_group_75 0.063 r_ncsr_local_group_87 0.063 r_ncsr_local_group_1 0.062 r_ncsr_local_group_2 0.062 r_ncsr_local_group_11 0.062 r_ncsr_local_group_43 0.062 r_ncsr_local_group_52 0.062 r_ncsr_local_group_59 0.062 r_ncsr_local_group_67 0.062 r_ncsr_local_group_13 0.061 r_ncsr_local_group_23 0.061 r_ncsr_local_group_37 0.061 r_ncsr_local_group_45 0.061 r_ncsr_local_group_50 0.061 r_ncsr_local_group_53 0.061 r_ncsr_local_group_15 0.06 r_ncsr_local_group_22 0.06 r_ncsr_local_group_27 0.06 r_ncsr_local_group_58 0.06 r_ncsr_local_group_34 0.059 r_ncsr_local_group_44 0.059 r_ncsr_local_group_71 0.059 r_ncsr_local_group_81 0.059 r_ncsr_local_group_76 0.058 r_ncsr_local_group_8 0.057 r_ncsr_local_group_61 0.057 r_ncsr_local_group_79 0.057 r_ncsr_local_group_80 0.057 r_ncsr_local_group_7 0.056 r_ncsr_local_group_29 0.056 r_ncsr_local_group_36 0.056 r_ncsr_local_group_39 0.056 r_ncsr_local_group_74 0.056 r_ncsr_local_group_90 0.056 r_ncsr_local_group_5 0.055 r_ncsr_local_group_25 0.055 r_ncsr_local_group_64 0.055 r_ncsr_local_group_69 0.055 r_ncsr_local_group_30 0.054 r_ncsr_local_group_48 0.054 r_ncsr_local_group_57 0.054 r_ncsr_local_group_35 0.051 r_ncsr_local_group_17 0.05 r_ncsr_local_group_31 0.05 r_ncsr_local_group_9 0.048 r_ncsr_local_group_28 0.048 r_ncsr_local_group_54 0.046 r_ncsr_local_group_55 0.046 r_ncsr_local_group_88 0.046 r_ncsr_local_group_91 0.046 r_ncsr_local_group_70 0.045 r_ncsr_local_group_60 0.042 r_ncsr_local_group_38 0.04 r_ncsr_local_group_46 0.04 r_ncsr_local_group_47 0.04 r_ncsr_local_group_62 0.038 r_ncsr_local_group_56 0.037 r_bond_other_d 0.036 r_ncsr_local_group_63 0.036 r_gen_planes_other 0.019 r_bond_refined_d 0.013 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14676 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing