7BRA

Bacillus subtilis IRG1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2HP0

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293.15	0.1M CAPS pH 9.8 1.5M Ammonium sulfate 0.2M Lithium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.82	56.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.213	α = 90
b = 110.87	β = 90
c = 167.652	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	125	PIXEL	DECTRIS EIGER2 X 9M		2019-05-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PAL/PLS BEAMLINE 5C (4A)	1.000	PAL/PLS	5C (4A)

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.78	39.39	99.8	0.085	30.47	12.3		105057

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.78	1.82			1.13

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2HP0	1.785	39.387	104967	5250	99.382	0.176	0.1746	0.2009	24.257

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.433			-0.286		-1.147

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.469
r_dihedral_angle_4_deg	19.441
r_dihedral_angle_3_deg	13.958
r_dihedral_angle_1_deg	5.64
r_lrange_it	5.055
r_lrange_other	4.975
r_scangle_other	4.555
r_scangle_it	4.554
r_scbond_it	3.285
r_scbond_other	3.285
r_mcangle_it	2.709
r_mcangle_other	2.709
r_angle_other_deg	2.32
r_mcbond_other	2.166
r_mcbond_it	2.165
r_angle_refined_deg	1.819
r_symmetry_xyhbond_nbd_refined	0.334
r_xyhbond_nbd_refined	0.262
r_chiral_restr	0.261
r_nbd_refined	0.231
r_symmetry_xyhbond_nbd_other	0.221
r_symmetry_nbd_other	0.214
r_nbtor_refined	0.184
r_nbd_other	0.174
r_symmetry_nbd_refined	0.124
r_symmetry_nbtor_other	0.07
r_bond_other_d	0.036
r_bond_refined_d	0.014
r_gen_planes_refined	0.005
r_gen_planes_other	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6734
Nucleic Acid Atoms
Solvent Atoms	886
Heterogen Atoms	38

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing