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p62PH in cesium chloride (0.7 M CsCl in crystallization condition and cryo protectant)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.7 M cesium chloride, 18 % (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.3 46.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.426 α = 90 b = 106.791 β = 90 c = 75.87 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.77114 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 43.67 94.9 0.15 0.152 0.026 0.999 22 33 12670
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 65.1 1.359 1.392 0.293 0.851 21.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 43.67 12052 599 94.49 0.1847 0.1832 0.192 0.2145 0.2205 RANDOM 19.978
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -1.57 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.641 r_dihedral_angle_4_deg 16.974 r_dihedral_angle_3_deg 14.102 r_dihedral_angle_1_deg 5.59 r_angle_refined_deg 2.108 r_angle_other_deg 1.136 r_chiral_restr 0.133 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.641 r_dihedral_angle_4_deg 16.974 r_dihedral_angle_3_deg 14.102 r_dihedral_angle_1_deg 5.59 r_angle_refined_deg 2.108 r_angle_other_deg 1.136 r_chiral_restr 0.133 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 894 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 14
Software Software Software Name Purpose XDS data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction