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p62PH in cesium chloride (0.75 M CsCl in cryo protectant)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.9 M potassium chloride, 17 % (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.53 51.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.25 α = 90 b = 101.76 β = 90 c = 75.1 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.7712 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 42.12 97.4 0.123 0.125 0.025 0.998 17.4 24.7 12177
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 93.6 1.392 1.421 0.283 0.833 23.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 42.12 11574 597 97.07 0.1989 0.1977 0.2058 0.2213 0.2283 RANDOM 45.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.95 -1.86 -2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.928 r_dihedral_angle_4_deg 22.832 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 6.493 r_angle_refined_deg 1.93 r_angle_other_deg 1.084 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.928 r_dihedral_angle_4_deg 22.832 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 6.493 r_angle_refined_deg 1.93 r_angle_other_deg 1.084 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 878 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 7
Software Software Software Name Purpose XDS data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction