7BFX
deoxyxylose nucleic acid hairpin
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.9 mM oligomer | 100% D2O | 0 M | 6.9 | 1 atm | 283 | Bruker AVANCE II 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | explicit solvent | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CARA | Keller and Wuthrich | |
2 | peak picking | CARA | Keller and Wuthrich | |
3 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |