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Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 35-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 18% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammoniumthiocyanat
Crystal Properties Matthews coefficient Solvent content 2.46 50.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.039 α = 90 b = 49.634 β = 90 c = 71.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.976260 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 71.2 97.9 0.043 0.047 0.018 1 22.2 13 25151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.46 1.608 1.737 0.653 0.807 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4tw7 1.44 35.002 25108 1218 97.586 0.141 0.1397 0.1392 0.1663 0.1649 30.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.855 -1.172 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.086 r_dihedral_angle_3_deg 13.91 r_rigid_bond_restr 13.846 r_dihedral_angle_4_deg 9.261 r_dihedral_angle_1_deg 8.019 r_scbond_it 7.28 r_scbond_other 7.274 r_lrange_it 7.034 r_lrange_other 7.009 r_scangle_other 6.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.086 r_dihedral_angle_3_deg 13.91 r_rigid_bond_restr 13.846 r_dihedral_angle_4_deg 9.261 r_dihedral_angle_1_deg 8.019 r_scbond_it 7.28 r_scbond_other 7.274 r_lrange_it 7.034 r_lrange_other 7.009 r_scangle_other 6.803 r_scangle_it 6.802 r_mcbond_it 6.583 r_mcbond_other 6.577 r_mcangle_it 6.055 r_mcangle_other 6.051 r_angle_refined_deg 2.19 r_angle_other_deg 1.691 r_chiral_restr_other 1.606 r_nbd_other 0.242 r_symmetry_nbd_refined 0.237 r_symmetry_nbd_other 0.201 r_nbd_refined 0.199 r_symmetry_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.113 r_symmetry_nbtor_other 0.088 r_bond_refined_d 0.021 r_gen_planes_refined 0.014 r_bond_other_d 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data reduction XDS data collection Aimless data scaling PHASER phasing