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Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 64a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 18% PEG 3350, 0.1 M HEPES pH 7.5, 0.2M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.52 51.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.51 α = 90 b = 48.51 β = 90 c = 105.935 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.976260 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 105.93 100 0.062 0.065 0.02 1 21.1 19.1 32570
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 1.499 1.598 0.549 0.774 16.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4tw7 1.35 39.003 32515 1623 99.948 0.137 0.1353 0.1342 0.1583 0.1567 22.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.188 0.094 0.188 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.231 r_dihedral_angle_3_deg 12.984 r_dihedral_angle_4_deg 12.746 r_dihedral_angle_1_deg 7.93 r_lrange_it 5.488 r_lrange_other 5.418 r_scangle_it 5.198 r_scangle_other 5.196 r_rigid_bond_restr 4.865 r_scbond_it 4.414
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.231 r_dihedral_angle_3_deg 12.984 r_dihedral_angle_4_deg 12.746 r_dihedral_angle_1_deg 7.93 r_lrange_it 5.488 r_lrange_other 5.418 r_scangle_it 5.198 r_scangle_other 5.196 r_rigid_bond_restr 4.865 r_scbond_it 4.414 r_scbond_other 4.41 r_mcangle_it 4.408 r_mcangle_other 4.405 r_mcbond_it 3.451 r_mcbond_other 3.451 r_angle_refined_deg 2.306 r_angle_other_deg 1.855 r_chiral_restr_other 1.547 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.201 r_symmetry_nbd_refined 0.193 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.156 r_chiral_restr 0.131 r_nbd_other 0.129 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.021 r_gen_planes_refined 0.014 r_bond_other_d 0.006 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 969 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data collection Aimless data reduction Aimless data scaling PHASER phasing