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Chimeric Streptavidin With A Dimerization Domain For Artificial Transfer Hydrogenation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20 %w/v PEG 3350 (Polymer)
0.2 M KF (Salt)
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.285 α = 90 b = 57.307 β = 94.616 c = 88.035 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2020-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.000029 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 47.98 98.9 0.159 0.188 0.1 0.996 9.2 6.8 48147
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 1.27 1.494 0.782 0.548 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2bc3 1.85 47.98 48131 2503 98.661 0.192 0.191 0.1943 0.2176 0.219 24.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.426 0.423 -1.657 2.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.713 r_dihedral_angle_4_deg 15.81 r_dihedral_angle_3_deg 12.872 r_dihedral_angle_1_deg 7.994 r_lrange_it 6.219 r_lrange_other 6.213 r_scangle_it 4.468 r_scangle_other 4.44 r_mcangle_it 3.59 r_mcangle_other 3.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.713 r_dihedral_angle_4_deg 15.81 r_dihedral_angle_3_deg 12.872 r_dihedral_angle_1_deg 7.994 r_lrange_it 6.219 r_lrange_other 6.213 r_scangle_it 4.468 r_scangle_other 4.44 r_mcangle_it 3.59 r_mcangle_other 3.589 r_scbond_it 2.891 r_scbond_other 2.849 r_angle_refined_deg 2.455 r_mcbond_it 2.274 r_mcbond_other 2.273 r_angle_other_deg 1.403 r_nbd_refined 0.2 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.179 r_nbd_other 0.144 r_xyhbond_nbd_refined 0.135 r_symmetry_xyhbond_nbd_refined 0.122 r_symmetry_nbd_refined 0.103 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.066 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3657 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 160
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data reduction XDS data scaling PHASER phasing