X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7B53 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52940.1M citrate pH 5.5 19% PEG4K 14% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2445.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.12α = 96.99
b = 58.15β = 91.82
c = 74.252γ = 104.99
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.873.55950.9966.21.882093
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.90.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7B531.8256.0876227412096.270.207820.206250.23657RANDOM41.098
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.340.36-0.090.270.74-0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.613
r_dihedral_angle_4_deg14.405
r_dihedral_angle_3_deg12.831
r_long_range_B_refined6.263
r_long_range_B_other6.246
r_dihedral_angle_1_deg5.32
r_scangle_other4.419
r_mcangle_it3.276
r_mcangle_other3.276
r_scbond_it2.809
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.613
r_dihedral_angle_4_deg14.405
r_dihedral_angle_3_deg12.831
r_long_range_B_refined6.263
r_long_range_B_other6.246
r_dihedral_angle_1_deg5.32
r_scangle_other4.419
r_mcangle_it3.276
r_mcangle_other3.276
r_scbond_it2.809
r_scbond_other2.809
r_mcbond_it2.226
r_mcbond_other2.226
r_angle_refined_deg1.192
r_angle_other_deg1.042
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7194
Nucleic Acid Atoms
Solvent Atoms287
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing