☰ Navigation Tabs
Crystal structure of MurE from E.coli in complex with Z757284952
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7B53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.1M citrate pH 5.5
11.6% PEG4K
20.3% 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.22 44.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.046 α = 96.99 b = 57.932 β = 91.4 c = 74.11 γ = 105.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-02-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96862 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 55.91 96.8 0.995 4.8 3.5 87528
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.88 0.419
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7B53 1.79 55.91 87528 4744 95.82 0.21702 0.21562 0.2189 0.24283 0.2454 RANDOM 39.534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 1.69 0.27 0.61 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.257 r_dihedral_angle_4_deg 16.788 r_dihedral_angle_3_deg 12.996 r_long_range_B_refined 6.28 r_long_range_B_other 6.265 r_dihedral_angle_1_deg 5.496 r_scangle_other 4.301 r_mcangle_it 3.385 r_mcangle_other 3.384 r_scbond_it 2.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.257 r_dihedral_angle_4_deg 16.788 r_dihedral_angle_3_deg 12.996 r_long_range_B_refined 6.28 r_long_range_B_other 6.265 r_dihedral_angle_1_deg 5.496 r_scangle_other 4.301 r_mcangle_it 3.385 r_mcangle_other 3.384 r_scbond_it 2.702 r_scbond_other 2.702 r_mcbond_it 2.18 r_mcbond_other 2.18 r_angle_refined_deg 1.21 r_angle_other_deg 1.054 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7282 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing