X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7B53 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52940.1M citrate pH 5.5 17% PEG4K 22% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2445.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.15α = 96.93
b = 58.24β = 91.27
c = 74.03γ = 105.2
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5773.3894.90.9977.51.7124106
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.571.650.427

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7B531.6556.09102513546496.590.194950.193230.22694RANDOM35.71
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.40.99-0.130.60.77-1.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.388
r_dihedral_angle_4_deg17.47
r_dihedral_angle_3_deg12.611
r_long_range_B_refined7.225
r_long_range_B_other7.217
r_dihedral_angle_1_deg6.134
r_scangle_other5.796
r_scbond_it3.983
r_scbond_other3.983
r_mcangle_it3.937
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.388
r_dihedral_angle_4_deg17.47
r_dihedral_angle_3_deg12.611
r_long_range_B_refined7.225
r_long_range_B_other7.217
r_dihedral_angle_1_deg6.134
r_scangle_other5.796
r_scbond_it3.983
r_scbond_other3.983
r_mcangle_it3.937
r_mcangle_other3.936
r_mcbond_it2.909
r_mcbond_other2.909
r_angle_refined_deg1.662
r_angle_other_deg1.221
r_chiral_restr0.109
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7236
Nucleic Acid Atoms
Solvent Atoms354
Heterogen Atoms106

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing