7B3J

Dynamic complex between all-D-enantiomeric peptide D3 with wild-type amyloid precursor protein 672-726 fragment (amyloid beta 1-55)

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	H/15N-HSQC	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
10	H/15N-HSQC	0.2 mM [U-13C; U-15N] APP672-726, 0.2 mM D3cys(MTSL)	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
9	H/15N-HSQC	0.2 mM [U-13C; U-15N] APP672-726, 0.2 mM D3cys(MTSL)	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
2	1H/15N-TROSY	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 800
12	1H/15N-TROSY	0.2 mM [U-13C; U-15N] APP672-726, 0.2 mM (MTSL)cysD3	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 800
11	1H/15N-TROSY	0.2 mM [U-13C; U-15N] APP672-726, 0.2 mM (MTSL)cysD3	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 800
3	1H/13C/15N-HNCA	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
4	1H/13C/15N-HN(CO)CA	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
5	1H/13C/15N-HNCO	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
6	1H/13C-HCCH-TOCSY	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 800
7	13C-edited NOESY-HSQC	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 600
8	15N-edited NOESY-HSQC	0.2 mM [U-13C; U-15N] APP672-726	90% H2O/10% D2O	20 mM	6.9	1 atm	303	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
molecular dynamics		GROMACS

NMR Ensemble Information
Conformer Selection Criteria	structures with acceptable covalent geometry
Conformers Calculated Total Number	10
Conformers Submitted Total Number	10
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	qMDD		Kazimierczuk & Orekhov
3	chemical shift assignment	CARA		Keller and Wuthrich
4	peak picking	CARA		Keller and Wuthrich
5	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
6	structure calculation	GROMACS		Abraham et al
7	refinement	GROMACS		Abraham et al

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.