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Crystal structure of UipA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 MES pH6 100mM, PEG6K 22%, ZnCl2 5-15mM Formamide 6%
Crystal Properties Matthews coefficient Solvent content 2.84 56.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.13 α = 90 b = 96.13 β = 90 c = 52.55 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.99987 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43 99.8 0.99 17.5 14 23892
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.33 0.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.343 42.991 10791 540 99.741 0.22 0.2184 0.2237 0.2474 0.2536 71.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.236 -2.236 4.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.297 r_dihedral_angle_4_deg 24.187 r_dihedral_angle_3_deg 18.168 r_lrange_it 14.878 r_lrange_other 14.871 r_scangle_it 12.535 r_scangle_other 12.525 r_scbond_it 9.194 r_scbond_other 9.185 r_mcangle_it 9.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.297 r_dihedral_angle_4_deg 24.187 r_dihedral_angle_3_deg 18.168 r_lrange_it 14.878 r_lrange_other 14.871 r_scangle_it 12.535 r_scangle_other 12.525 r_scbond_it 9.194 r_scbond_other 9.185 r_mcangle_it 9.173 r_mcangle_other 9.169 r_dihedral_angle_1_deg 8.228 r_mcbond_it 6.405 r_mcbond_other 6.405 r_angle_refined_deg 1.842 r_angle_other_deg 1.408 r_symmetry_xyhbond_nbd_refined 0.408 r_symmetry_nbd_refined 0.284 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.218 r_symmetry_nbd_other 0.194 r_nbd_other 0.193 r_nbtor_refined 0.16 r_xyhbond_nbd_other 0.117 r_symmetry_nbtor_other 0.09 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_other 0.035 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_metal_ion_refined 0.009 r_symmetry_metal_ion_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 962 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing