7AT7
Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, S34P mutant
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.5 mM TNFa_TM_S34P | trifluoroethanol/water | 0 M | 6.0 | 1 atm | 303 | Bruker AVANCE 600 |
2 | 2D 1H-1H TOCSY | 0.5 mM TNFa_TM_S34P | trifluoroethanol/water | 0 M | 6.0 | 1 atm | 303 | Bruker AVANCE 600 |
3 | 2D 1H-13C HSQC | 0.5 mM TNFa_TM_S34P | trifluoroethanol/water | 0 M | 6.0 | 1 atm | 303 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 3.2 | Bruker Biospin |
2 | chemical shift assignment | CcpNmr Analysis | 2.4.1 | CCPN |
3 | peak picking | CcpNmr Analysis | CCPN | |
4 | structure calculation | ARIA | Linge, O'Donoghue and Nilges |