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Influenza A PB2 in complex with VX-787
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4P1U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291.15 Sodium fluoride, Sodium bromide, Sodium iodide, Imidazole, MES monohydrate (acid), PEG 500, PEG 20000
Crystal Properties Matthews coefficient Solvent content 1.97 37.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.3 α = 71.12 b = 36.95 β = 75.62 c = 38.34 γ = 76.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2019-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 35.64 94.7 0.054 0.064 0.997 12.02 2.639 20014 17.919
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 95.3 0.136 0.184 0.968 4.27 1.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4P1U 1.55 35.64 19032 996 94.97 0.1849 0.1831 0.1926 0.2199 0.2299 RANDOM 13.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.1 -0.39 -0.51 0.11 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.013 r_dihedral_angle_4_deg 14.077 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.814 r_angle_refined_deg 1.758 r_angle_other_deg 1.519 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.013 r_dihedral_angle_4_deg 14.077 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.814 r_angle_refined_deg 1.758 r_angle_other_deg 1.519 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1248 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction MOLREP phasing