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Crystal structure of JAK3 in complex with FM601 (compound 10a)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LWM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277.15 25% PEG 3350, 0.1-0.2 M MgCl2, 0.1 M MES, pH 5.5
Crystal Properties Matthews coefficient Solvent content 1.98 37.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.667 α = 90 b = 62.498 β = 101.32 c = 67.869 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2018-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99986 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 45.56 97.6 0.108 0.129 0.052 0.994 8.2 6 37245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 97.7 0.721 0.872 0.35 0.823 2.4 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5lwm 1.95 45.56 35361 1868 97.27 0.2062 0.2035 0.2122 0.2549 0.2571 RANDOM 33.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.1 1.27 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.119 r_dihedral_angle_1_deg 19.836 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 14.21 r_angle_refined_deg 1.299 r_angle_other_deg 0.933 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.119 r_dihedral_angle_1_deg 19.836 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 14.21 r_angle_refined_deg 1.299 r_angle_other_deg 0.933 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4588 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 144
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing