7ALZ

GqqA- a novel type of quorum quenching acylases


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29110% PEG3350

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.627α = 90
b = 62.853β = 90
c = 95.935γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-06-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P110.9801PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.675099.70.060.9921.96.8279955
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.78980.610.923.366.67

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.6743.340018210799.690.159190.157820.18552RANDOM22.756
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.33-0.761.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.522
r_dihedral_angle_4_deg20.027
r_dihedral_angle_3_deg11.319
r_long_range_B_refined6.36
r_long_range_B_other6.234
r_dihedral_angle_1_deg6.14
r_scangle_other4.58
r_scbond_it3.255
r_scbond_other3.255
r_mcangle_it2.377
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.522
r_dihedral_angle_4_deg20.027
r_dihedral_angle_3_deg11.319
r_long_range_B_refined6.36
r_long_range_B_other6.234
r_dihedral_angle_1_deg6.14
r_scangle_other4.58
r_scbond_it3.255
r_scbond_other3.255
r_mcangle_it2.377
r_mcangle_other2.376
r_angle_refined_deg1.789
r_mcbond_it1.673
r_mcbond_other1.672
r_angle_other_deg1.178
r_chiral_restr0.116
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3006
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
Auto-Rickshawphasing