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Ancestral Flavin-containing monooxygenase (FMO) 1 (mammalian)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SE3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293.15 100 mM HEPES (pH 7.5), PEG 4000 (10% v/v) and glycerol (20% v/v)
Crystal Properties Matthews coefficient Solvent content 3.49 64.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.919 α = 90 b = 92.453 β = 95.12 c = 156.688 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.998 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 49.1 60.2 0.245 0.994 5.5 6.6 39983
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.041 14.1 7.993 0.028 1.1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6SE3 3 49.1 39119 817 60.08 0.22913 0.22841 0.2284 0.2638 0.2652 RANDOM 81.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.17 0.78 -0.32 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.921 r_dihedral_angle_3_deg 20.174 r_dihedral_angle_4_deg 15.269 r_long_range_B_refined 11.65 r_long_range_B_other 11.65 r_mcangle_it 7.73 r_mcangle_other 7.73 r_dihedral_angle_1_deg 7.193 r_scangle_other 7.026 r_mcbond_it 4.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.921 r_dihedral_angle_3_deg 20.174 r_dihedral_angle_4_deg 15.269 r_long_range_B_refined 11.65 r_long_range_B_other 11.65 r_mcangle_it 7.73 r_mcangle_other 7.73 r_dihedral_angle_1_deg 7.193 r_scangle_other 7.026 r_mcbond_it 4.66 r_mcbond_other 4.66 r_scbond_it 4.06 r_scbond_other 4.059 r_angle_refined_deg 1.359 r_angle_other_deg 1.118 r_chiral_restr 0.051 r_bond_refined_d 0.004 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16410 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 629
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling STARANISO data scaling PHASER phasing