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Cyrstal structure of CYRI-B/Fam49B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M carboxylic acid,
8% MPD_P1K_P33
0.1M MOPS/HEPES-Na pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.39 48.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.731 α = 90 b = 166.686 β = 112.343 c = 45.131 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 83.343 99.94 0.97 25 23 24725
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.45 0.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.37 83.343 24725 1242 100 0.205 0.2025 0.2239 0.2454 0.2603 78.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 13.654 3.214 -10.043 -4.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.828 r_dihedral_angle_3_deg 19.037 r_dihedral_angle_4_deg 18.699 r_lrange_other 12.16 r_lrange_it 12.157 r_scangle_it 8.656 r_scangle_other 8.655 r_mcangle_it 7.892 r_mcangle_other 7.891 r_dihedral_angle_1_deg 7.804
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.828 r_dihedral_angle_3_deg 19.037 r_dihedral_angle_4_deg 18.699 r_lrange_other 12.16 r_lrange_it 12.157 r_scangle_it 8.656 r_scangle_other 8.655 r_mcangle_it 7.892 r_mcangle_other 7.891 r_dihedral_angle_1_deg 7.804 r_scbond_it 5.572 r_scbond_other 5.551 r_mcbond_it 5.302 r_mcbond_other 5.302 r_angle_other_deg 1.065 r_angle_refined_deg 1.001 r_nbd_other 0.282 r_symmetry_nbd_other 0.242 r_symmetry_nbd_refined 0.235 r_symmetry_xyhbond_nbd_refined 0.216 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.2 r_ncsr_local_group_1 0.165 r_nbtor_refined 0.163 r_symmetry_xyhbond_nbd_other 0.1 r_xyhbond_nbd_other 0.099 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.025 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_bond_refined_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4552 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction DIALS data scaling PHASER phasing