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Structure of the Kar9 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20 mM Tris-HCl, pH 7.5, 500 mM NaCl supplemented with 250 mM gamma amino butyric acid (GABA).
Crystal Properties Matthews coefficient Solvent content 6.48 81.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.621 α = 90 b = 125.621 β = 90 c = 165.274 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50.01 99.8 0.999 11.09 12.3 38506
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.4 0.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.3 46.86 35932 2574 99.93 0.2659 0.2643 0.2622 0.289 0.2858 RANDOM 144.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.34 -2.34 4.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.664 r_dihedral_angle_3_deg 17.553 r_dihedral_angle_4_deg 12.974 r_dihedral_angle_1_deg 5.236 r_angle_refined_deg 1.204 r_angle_other_deg 1.184 r_chiral_restr 0.057 r_gen_planes_refined 0.004 r_bond_refined_d 0.002 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.664 r_dihedral_angle_3_deg 17.553 r_dihedral_angle_4_deg 12.974 r_dihedral_angle_1_deg 5.236 r_angle_refined_deg 1.204 r_angle_other_deg 1.184 r_chiral_restr 0.057 r_gen_planes_refined 0.004 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5948 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing