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The structure of Artemis variant D37A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TT5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277.15 0.2 M Ammonium Acetate, 0.1 M Bis-TRIS pH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.92 36.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.909 α = 82.89 b = 48.062 β = 76.43 c = 48.207 γ = 86.38
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.66 97.3 0.053 0.998 11.7 3.6 33287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 96 0.532 0.816 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6TT5 1.7 47.66 31633 1653 97.34 0.1874 0.1859 0.1951 0.2161 0.2215 RANDOM 25.925
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.66 -2.11 0.27 -0.23 0.74 -1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.558 r_dihedral_angle_4_deg 19.943 r_dihedral_angle_3_deg 12.765 r_dihedral_angle_1_deg 5.919 r_angle_other_deg 3.712 r_angle_refined_deg 1.306 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_other 0.007 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.558 r_dihedral_angle_4_deg 19.943 r_dihedral_angle_3_deg 12.765 r_dihedral_angle_1_deg 5.919 r_angle_other_deg 3.712 r_angle_refined_deg 1.306 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_other 0.007 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2809 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 14
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction