6ZPL

Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions.

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	LIPIDIC CUBIC PHASE	7	292.75	Crystals appeared in 3-10 days in 0.1 M ADA pH 7, 13-25% PEG600, 4-14% v/v, 1,3-Butanediol with the longest dimension of 2-5 um.

Crystal Properties
Matthews coefficient	Solvent content
3.24	61.98

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 116.41	α = 90
b = 69.71	β = 92.86
c = 149.43	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-20	M	SINGLE WAVELENGTH
2	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-17	M	SINGLE WAVELENGTH
3	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-16	M	SINGLE WAVELENGTH
4	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-13	M	SINGLE WAVELENGTH
5	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-09	M	SINGLE WAVELENGTH
6	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-08	M	SINGLE WAVELENGTH
7	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-05	M	SINGLE WAVELENGTH
8	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-04	M	SINGLE WAVELENGTH
9	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-02	M	SINGLE WAVELENGTH
10	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-12-01	M	SINGLE WAVELENGTH
11	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-11-29	M	SINGLE WAVELENGTH
12	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-11-28	M	SINGLE WAVELENGTH
13	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-11-20	M	SINGLE WAVELENGTH
14	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-11-06	M	SINGLE WAVELENGTH
15	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-10-23	M	SINGLE WAVELENGTH
16	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-09-24	M	SINGLE WAVELENGTH
17	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-09-02	M	SINGLE WAVELENGTH
18	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-07-13	M	SINGLE WAVELENGTH
19	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-07-12	M	SINGLE WAVELENGTH
20	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-06-12	M	SINGLE WAVELENGTH
21	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	Mirrors	2018-03-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
2	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
3	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
4	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
5	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
6	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
7	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
8	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
9	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
10	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
11	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
12	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
13	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
14	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
15	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
16	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
17	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
18	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
19	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
20	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)
21	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.98	PETRA III, EMBL c/o DESY	P14 (MX2)

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.9	29.86	99.61	0.9253	0.2571	0.982	4.39	12.6		22222			101.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.9	4.039	100		0.276	1.13	12

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4us3, 6dzz	3.945	29.07	21462	1072	100	0.2774	0.2766	0.2914	RANDOM	106.35

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
9.39		0.981	-27.8287		18.4387

RMS Deviations
Key	Refinement Restraint Deviation
t_other_torsion	15.66
t_omega_torsion	3.97
t_angle_deg	0.94
t_bond_d	0.007
t_dihedral_angle_d
t_trig_c_planes
t_gen_planes
t_it
t_nbd
t_improper_torsion

RMS Deviations
Key	Refinement Restraint Deviation
t_other_torsion	15.66
t_omega_torsion	3.97
t_angle_deg	0.94
t_bond_d	0.007
t_dihedral_angle_d
t_trig_c_planes
t_gen_planes
t_it
t_nbd
t_improper_torsion
t_pseud_angle
t_chiral_improper_torsion
t_sum_occupancies
t_utility_distance
t_utility_angle
t_utility_torsion
t_ideal_dist_contact