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Solid-state NMR structure of the D-Arg4,L10-teixobactin - Lipid II complex in lipid bilayers.
SOLID-STATE NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NH
25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin
40mM Phosphate 25mM NaCl
40 mM
7.0
1 atm
298
Bruker AVANCE III 950
2
2D CC
25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin
40mM Phosphate 25mM NaCl
40 mM
7.0
1 atm
298
Bruker AVANCE III 950
3
2D TOBSY
25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin
40mM Phosphate 25mM NaCl
40 mM
7.0
1 atm
298
Bruker AVANCE III 950
4
3D HNCO
25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin
40mM Phosphate 25mM NaCl
40 mM
7.0
1 atm
298
Bruker AVANCE III 950
6
3D HNCA
25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin
40mM Phosphate 25mM NaCl
40 mM
7.0
1 atm
298
Bruker AVANCE III 950
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE III
950
2
Bruker
AVANCE III
700
3
Bruker
AVANCE III
800
4
Bruker
AVANCE III
500
NMR Refinement
Method
Details
Software
torsion angle dynamics
HADDOCK
NMR Ensemble Information
Conformer Selection Criteria
all calculated structures submitted
Conformers Calculated Total Number
26
Conformers Submitted Total Number
26
Representative Model
1 (medoid)
Additional NMR Experimental Information
Details
All the structures are aligned to chains A,B,E,F of model 5. Residues 1-5 and 9-12 in chains C,D,G,H are highly flexible (no NMR restraints were applied).Alignment was performed in PyMol using the alignto command, and we converted the pdb file to a cif file using the online convertor provided by wwPDB.