6YFY

Solid-state NMR structure of the D-Arg4,L10-teixobactin - Lipid II complex in lipid bilayers.


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NH25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin40mM Phosphate 25mM NaCl40 mM7.01 atm298Bruker AVANCE III 950
22D CC25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin40mM Phosphate 25mM NaCl40 mM7.01 atm298Bruker AVANCE III 950
32D TOBSY25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin40mM Phosphate 25mM NaCl40 mM7.01 atm298Bruker AVANCE III 950
43D HNCO25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin40mM Phosphate 25mM NaCl40 mM7.01 atm298Bruker AVANCE III 950
63D HNCA25 mM sodium chloride, 40 mM sodium phosphate, 1.6 mM [U-99% 13C; U-99% 15N] D-Arg,Leu10-teixobactin, 0.8 mM [U-99% 13C; U-99% 15N] Lipid II, 1.6 mM [U-99% 13C; U-99% 15N] Leu10-teixobactin40mM Phosphate 25mM NaCl40 mM7.01 atm298Bruker AVANCE III 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III950
2BrukerAVANCE III700
3BrukerAVANCE III800
4BrukerAVANCE III500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsHADDOCK
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number26
Conformers Submitted Total Number26
Representative Model1 (medoid)
Additional NMR Experimental Information
DetailsAll the structures are aligned to chains A,B,E,F of model 5. Residues 1-5 and 9-12 in chains C,D,G,H are highly flexible (no NMR restraints were applied).Alignment was performed in PyMol using the alignto command, and we converted the pdb file to a cif file using the online convertor provided by wwPDB.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2structure calculationHADDOCKBonvin
3chemical shift assignmentSparkyGoddard
4peak pickingTopSpinBruker Biospin