☰ Navigation Tabs
Crystal structure of Gdx-Clo from Small Multidrug Resistance family of transporters in complex with phenylguanidinium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 100 mM LiNaSO4, 0.1 M Tris pH 8.75, 34% PEG 600
Crystal Properties Matthews coefficient Solvent content 4.3 71.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.819 α = 90 b = 50.507 β = 92.18 c = 108.575 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2019-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9787 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 59 85 0.132 0.145 0.057 0.946 6.4 7.1 9466
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 3 0.646 0.723 0.438 0.807 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.53 58.39 9018 468 36.53 0.2596 0.2571 0.2595 0.3093 0.3133 RANDOM 52.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.69 -0.19 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.546 r_dihedral_angle_3_deg 15.736 r_dihedral_angle_4_deg 11.561 r_dihedral_angle_1_deg 7.232 r_angle_refined_deg 1.536 r_angle_other_deg 1.188 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.546 r_dihedral_angle_3_deg 15.736 r_dihedral_angle_4_deg 11.561 r_dihedral_angle_1_deg 7.232 r_angle_refined_deg 1.536 r_angle_other_deg 1.188 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2959 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing SHARP phasing STARANISO data scaling DIALS data reduction