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Crystal structure of the haemagglutinin mutant (Gln226Leu, Gly228Ser) from an H10N7 seal influenza virus isolated in Germany with 2mM EDTA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4D00
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 6% PEG3350, 0.1 M MES pH6.5
Crystal Properties Matthews coefficient Solvent content 3.1 59.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.148 α = 90 b = 215.596 β = 100.46 c = 72.87 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 91.41 98.8 0.998 12.7 7 131081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 0.972 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4D00 2 61.41 131026 6523 98.76 0.2103 0.2093 0.2112 0.2306 0.2325 RANDOM 40.9037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.618 r_dihedral_angle_4_deg 14.038 r_dihedral_angle_3_deg 13.07 r_dihedral_angle_1_deg 6.281 r_angle_other_deg 4.162 r_mcangle_it 2.834 r_mcbond_it 1.844 r_mcbond_other 1.842 r_angle_refined_deg 1.686 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.618 r_dihedral_angle_4_deg 14.038 r_dihedral_angle_3_deg 13.07 r_dihedral_angle_1_deg 6.281 r_angle_other_deg 4.162 r_mcangle_it 2.834 r_mcbond_it 1.844 r_mcbond_other 1.842 r_angle_refined_deg 1.686 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_other 0.004 r_gen_planes_refined 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11491 Nucleic Acid Atoms Solvent Atoms 1101 Heterogen Atoms 200
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling PHASER phasing