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Enterococcus italicus Csm6 bound to cyclic hexa-2'-fluoro-hexa-dAMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM HEPES pH 7.5
1.6 M Ammonium sulphate
25 mM Lithium perchlorate
Crystal Properties Matthews coefficient Solvent content 3.01 57.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.604 α = 90.033 b = 106.686 β = 90.007 c = 116.793 γ = 90.1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2019-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 48.51 90.8 0.07649 0.0902 0.04726 0.998 13.12 3.5 156394 37.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.51 97.78 0.4734 0.5536 0.2849 0.781 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SIRAS FREE R-VALUE 2.42 48.51 1.98 156268 7655 90.85 0.2648 0.2635 0.2645 0.2917 0.2932 50.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.869 f_angle_d 0.7859 f_chiral_restr 0.0459 f_bond_d 0.0035 f_plane_restr 0.0032
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27202 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 548
Software Software Software Name Purpose PHENIX refinement XDS data reduction Coot model building PHASER phasing autoPROC data scaling