6TU5

Influenza A/H7N9 polymerase core (apo)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7281Protein at about 9 mg/ml 0.1 M Tris pH 7.0, 8-13% PEG 8K, 0.2 M MgCl2, 0.1 M guanidine hydrochloride
Crystal Properties
Matthews coefficientSolvent content
2.856.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.512α = 90
b = 143.173β = 90
c = 335.372γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 4M2016-06-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-30.9677ESRFMASSIF-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.325132.02492.70.190.1990.0570.99710.711.650439
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.3253.46342.22.2982.3880.51.513.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4WSB3.325132.02450439249692.3550.2070.20390.2675119.623
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.28-0.4850.206
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.069
r_dihedral_angle_3_deg16.956
r_dihedral_angle_4_deg13.69
r_lrange_it12.931
r_lrange_other12.931
r_mcangle_it8.93
r_mcangle_other8.93
r_scangle_it8.463
r_scangle_other8.463
r_dihedral_angle_1_deg6.079
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.069
r_dihedral_angle_3_deg16.956
r_dihedral_angle_4_deg13.69
r_lrange_it12.931
r_lrange_other12.931
r_mcangle_it8.93
r_mcangle_other8.93
r_scangle_it8.463
r_scangle_other8.463
r_dihedral_angle_1_deg6.079
r_mcbond_it5.479
r_mcbond_other5.475
r_scbond_it4.973
r_scbond_other4.973
r_angle_refined_deg1.217
r_angle_other_deg1.064
r_nbd_refined0.185
r_nbd_other0.179
r_symmetry_nbd_refined0.17
r_symmetry_nbd_other0.165
r_nbtor_refined0.154
r_xyhbond_nbd_refined0.136
r_symmetry_xyhbond_nbd_refined0.134
r_ncsr_local_group_30.112
r_ncsr_local_group_10.085
r_ncsr_local_group_20.081
r_symmetry_nbtor_other0.075
r_chiral_restr0.041
r_symmetry_xyhbond_nbd_other0.026
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms21142
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
autoPROCdata scaling
MOLREPphasing