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GSTF1 from Alopecurus myosuroides
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AXD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 sodium citrate pH 5.6, Na/K tartrate 1.5-2.0 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.45 49.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.695 α = 90 b = 103.695 β = 90 c = 78.769 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.916 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 52 100 0.034 0.014 27.3 12.6 38156
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.6 0.079
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1AXD 1.53 51.847 38090 1886 99.851 0.193 0.1928 0.1953 0.2058 0.2081 30.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.238 0.119 0.238 -0.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.613 r_dihedral_angle_4_deg 15.103 r_dihedral_angle_3_deg 13.321 r_lrange_other 7.514 r_lrange_it 7.51 r_scangle_other 6.13 r_scangle_it 6.129 r_dihedral_angle_1_deg 6.068 r_mcangle_it 4.339 r_mcangle_other 4.337
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.613 r_dihedral_angle_4_deg 15.103 r_dihedral_angle_3_deg 13.321 r_lrange_other 7.514 r_lrange_it 7.51 r_scangle_other 6.13 r_scangle_it 6.129 r_dihedral_angle_1_deg 6.068 r_mcangle_it 4.339 r_mcangle_other 4.337 r_scbond_it 4.181 r_scbond_other 4.171 r_mcbond_it 3.007 r_mcbond_other 3.006 r_angle_other_deg 2.304 r_angle_refined_deg 1.818 r_nbd_refined 0.234 r_symmetry_nbd_other 0.222 r_nbd_other 0.191 r_nbtor_refined 0.189 r_symmetry_nbd_refined 0.188 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.075 r_symmetry_xyhbond_nbd_refined 0.072 r_bond_other_d 0.034 r_gen_planes_other 0.019 r_bond_refined_d 0.013 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1522 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing