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Cryo-EM structure of AtNBR1-PB1 filament (S-type)
Refinement RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 69.718 r_scbond_it 61.513 r_mcbond_it 41.204 r_dihedral_angle_2_deg 25.753 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 15.434 r_dihedral_angle_1_deg 7.813 r_angle_refined_deg 1.667 r_chiral_restr 0.109 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 69.718 r_scbond_it 61.513 r_mcbond_it 41.204 r_dihedral_angle_2_deg 25.753 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 15.434 r_dihedral_angle_1_deg 7.813 r_angle_refined_deg 1.667 r_chiral_restr 0.109 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample AtNBR1-PB1 (S-type)
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 18021 Reported Resolution (Å) 4.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 5.905 Angular Rotation -31.17
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Correlation coefficient Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 4500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION SPRING 0.85 IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND 4 MODEL FITTING PHENIX dev-3500 MODEL REFINEMENT PHENIX dev-3500 INITIAL EULER ASSIGNMENT SPRING 0.85 FINAL EULER ASSIGNMENT SPRING 0.85 CLASSIFICATION SPRING 0.85 RECONSTRUCTION SPRING 0.85
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION