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Crystal structure of monooxygenase RutA under anaerobic conditions.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5WAN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 100 mM Bis-Tris pH 6.5, 1900 mM Ammonium Sulphate, 2-5% MPD (v/v), 1 mM FMN
Crystal Properties Matthews coefficient Solvent content 2.71 54.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.033 α = 90 b = 88.033 β = 90 c = 96.901 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.45 94.3 0.15 7.5 8.9 21254
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 0.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5WAN 2.2 44.055 21126 1089 93.856 0.191 0.1888 0.1917 0.2372 0.2413 36.232
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.854 -0.427 -0.854 2.771
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.095 r_dihedral_angle_4_deg 17.945 r_dihedral_angle_3_deg 14.585 r_dihedral_angle_1_deg 7.122 r_lrange_it 7.079 r_scangle_it 5.843 r_scbond_it 4.144 r_mcangle_it 3.501 r_mcbond_it 2.619 r_angle_refined_deg 1.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.095 r_dihedral_angle_4_deg 17.945 r_dihedral_angle_3_deg 14.585 r_dihedral_angle_1_deg 7.122 r_lrange_it 7.079 r_scangle_it 5.843 r_scbond_it 4.144 r_mcangle_it 3.501 r_mcbond_it 2.619 r_angle_refined_deg 1.577 r_nbtor_refined 0.316 r_nbd_refined 0.218 r_symmetry_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.137 r_chiral_restr 0.112 r_xyhbond_nbd_refined 0.109 r_bond_refined_d 0.008 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2585 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing