Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Nucleosome core particle bound by PFV intasome post in the post catalytic state
Sample Components
Nucleosome
Integrase
Human DNA
DNA
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
LEICA EM CPC
Cryogen Name
ETHANE
Sample Vitrification Details
1 min incubation 3.5s blot
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
177155
Reported Resolution (Å)
3.9
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1 (3UTB, 3OS0)
Refinement Space
REAL
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
The initial model was placed in the density using Chimera. Manual building was performed in Coot and final refinement was carried out using phenix.rea ...
The initial model was placed in the density using Chimera. Manual building was performed in Coot and final refinement was carried out using phenix.real_space_refine and namdinator. Additional restraints describing protein secondary structure, DNA base pairing and stacking were used in Phenix.